Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1048854	1.00[ASN][1000 genomes]
rs1105123	0.84[EUR][1000 genomes]
rs11583999	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17394161	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17398377	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1929132	1.00[ASN][1000 genomes]
rs2781575	1.00[ASN][1000 genomes]
rs4847199	1.00[ASN][1000 genomes]
rs4847288	1.00[ASN][1000 genomes]
rs4847292	1.00[ASN][1000 genomes]
rs55763912	1.00[ASN][1000 genomes]
rs55803521	1.00[ASN][1000 genomes]
rs56023603	1.00[ASN][1000 genomes]
rs56184400	1.00[ASN][1000 genomes]
rs56251025	1.00[ASN][1000 genomes]
rs56265999	1.00[ASN][1000 genomes]
rs61782652	1.00[ASN][1000 genomes]
rs61784299	1.00[ASN][1000 genomes]
rs71652552	1.00[ASN][1000 genomes]
rs7535005	1.00[ASN][1000 genomes]
rs7550859	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871416	chr1:94566311-94635028	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv870932	chr1:94579053-94607607	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv871502	chr1:94579426-94607607	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv871306	chr1:94579426-94609478	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv871210	chr1:94579426-94629643	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94598400-94600600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:94599600-94600600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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