The 2.0 version of rSNPBase

Variant report

Variant rs1048854
Chromosome Location chr1:94643531-94643532
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:70 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:94631800-94646600 Weak transcription Cortex derived primary cultured neurospheres brain
2 chr1:94634200-94656600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
3 chr1:94634200-94658400 Strong transcription HSMM muscle
4 chr1:94634200-94660800 Strong transcription NH-A brain
5 chr1:94634200-94661800 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
6 chr1:94634200-94675200 Weak transcription Rectal Smooth Muscle rectum
7 chr1:94634400-94646400 Strong transcription Muscle Satellite Cultured Cells --
8 chr1:94634400-94646600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
9 chr1:94634400-94660400 Strong transcription NHDF-Ad bronchial
10 chr1:94634600-94662000 Strong transcription HMEC breast
11 chr1:94634800-94644400 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
12 chr1:94634800-94645000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
13 chr1:94635000-94646800 Weak transcription Esophagus oesophagus
14 chr1:94635000-94658000 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
15 chr1:94635800-94646200 Strong transcription Osteobl bone
16 chr1:94636000-94658400 Strong transcription Liver Liver
17 chr1:94636200-94644000 Strong transcription Breast Myoepithelial Primary Cells Breast
18 chr1:94636200-94673400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
19 chr1:94636600-94647400 Strong transcription Adipose Nuclei Adipose
20 chr1:94636800-94644200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
21 chr1:94636800-94645000 Strong transcription Skeletal Muscle Female skeletal muscle
22 chr1:94637600-94650800 Weak transcription Pancreatic Islets Pancreatic Islet
23 chr1:94637800-94648800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
24 chr1:94637800-94656200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
25 chr1:94638000-94644000 Weak transcription Stomach Smooth Muscle stomach
26 chr1:94638200-94646000 Weak transcription Hela-S3 cervix
27 chr1:94638200-94646400 Weak transcription Fetal Lung lung
28 chr1:94638200-94654400 Weak transcription Ovary ovary
29 chr1:94638400-94647400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
30 chr1:94638400-94647800 Weak transcription Brain Inferior Temporal Lobe brain
31 chr1:94638400-94669200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
32 chr1:94638800-94647400 Strong transcription Fetal Muscle Trunk muscle
33 chr1:94639000-94645200 Strong transcription Fetal Muscle Leg muscle
34 chr1:94639000-94647400 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
35 chr1:94639000-94647600 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
36 chr1:94639200-94649000 Weak transcription Right Atrium heart
37 chr1:94639400-94645000 Strong transcription Skeletal Muscle Male skeletal muscle
38 chr1:94639400-94646800 Strong transcription Left Ventricle heart
39 chr1:94639400-94651200 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
40 chr1:94640000-94644400 Weak transcription Pancreas Pancrea
41 chr1:94640000-94646200 Weak transcription Brain Anterior Caudate brain
42 chr1:94640000-94650200 Weak transcription Psoas Muscle Psoas
43 chr1:94640000-94684800 Weak transcription Spleen Spleen
44 chr1:94640200-94644000 Weak transcription Right Ventricle heart
45 chr1:94640200-94647000 Weak transcription Placenta Amnion Placenta Amnion
46 chr1:94640200-94648800 Weak transcription ES-I3 Cell Line embryonic stem cell
47 chr1:94640200-94667800 Weak transcription Gastric stomach
48 chr1:94640400-94643600 Weak transcription HepG2 liver
49 chr1:94640400-94644000 Weak transcription HUES6 Cell Line embryonic stem cell
50 chr1:94640400-94644200 Weak transcription A549 lung

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Last update: Aug 31, 2015