Variant report

Variant	rs17400584
Chromosome Location	chr1:94762546-94762547
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94760616..94762980-chr1:94789688..94791734,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236098	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11580391	0.88[EUR][1000 genomes]
rs1542728	0.80[CEU][hapmap];0.89[TSI][hapmap];0.92[EUR][1000 genomes]
rs17111203	0.85[JPT][hapmap]
rs17111236	0.87[ASN][1000 genomes]
rs17396055	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1929132	0.80[CEU][hapmap];0.85[EUR][1000 genomes]
rs2130896	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55937938	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56184400	0.85[EUR][1000 genomes]
rs61782652	0.85[EUR][1000 genomes]
rs61784299	0.88[EUR][1000 genomes]
rs72962392	0.95[ASN][1000 genomes]
rs72964308	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94752600-94765200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:94759200-94762600	Weak transcription	Spleen	Spleen
3	chr1:94759400-94764400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr1:94760600-94765600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:94760600-94770000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr1:94760800-94762600	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr1:94760800-94762800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:94761000-94764400	Enhancers	HUVEC	blood vessel
9	chr1:94761200-94763200	Enhancers	NHDF-Ad	bronchial
10	chr1:94761200-94764000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:94761200-94767000	Enhancers	NHLF	lung
12	chr1:94761200-94767400	Enhancers	Muscle Satellite Cultured Cells	--
13	chr1:94761200-94768200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:94761400-94762600	Weak transcription	Adipose Nuclei	Adipose
15	chr1:94761400-94762800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr1:94761600-94764200	Weak transcription	Fetal Lung	lung
17	chr1:94761600-94764600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr1:94761600-94765200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr1:94762000-94762800	Enhancers	Brain Hippocampus Middle	brain
20	chr1:94762000-94763000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr1:94762000-94763600	Enhancers	Left Ventricle	heart
22	chr1:94762000-94763600	Enhancers	Osteobl	bone
23	chr1:94762000-94764400	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr1:94762000-94764400	Weak transcription	HSMM	muscle
25	chr1:94762000-94765400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr1:94762000-94769400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr1:94762200-94763600	Enhancers	Fetal Stomach	stomach
28	chr1:94762200-94763600	Enhancers	Lung	lung
29	chr1:94762200-94767200	Enhancers	HepG2	liver
30	chr1:94762400-94764200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr1:94762400-94764400	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr1:94762400-94765200	Weak transcription	NH-A	brain

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