Variant report

Variant	rs55937938
Chromosome Location	chr1:94746018-94746019
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11580391	0.88[EUR][1000 genomes]
rs1542728	0.91[EUR][1000 genomes]
rs17111236	0.87[ASN][1000 genomes]
rs17396055	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17400584	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1929132	0.86[EUR][1000 genomes]
rs2130896	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56184400	0.85[EUR][1000 genomes]
rs61782652	0.86[EUR][1000 genomes]
rs61784299	0.89[EUR][1000 genomes]
rs72962392	0.95[ASN][1000 genomes]
rs72964308	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94734200-94748600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:94738400-94750000	Weak transcription	Pancreas	Pancrea
3	chr1:94738400-94750000	Weak transcription	HMEC	breast
4	chr1:94738600-94750200	Weak transcription	Fetal Kidney	kidney
5	chr1:94738800-94750600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:94739200-94746200	Weak transcription	NH-A	brain
7	chr1:94740200-94746600	Enhancers	Fetal Muscle Leg	muscle
8	chr1:94741200-94746800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr1:94741800-94747000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr1:94743000-94746600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr1:94743000-94746800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr1:94743000-94746800	Weak transcription	Fetal Lung	lung
13	chr1:94743000-94746800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr1:94743200-94746800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr1:94743400-94746800	Weak transcription	NHLF	lung
16	chr1:94743600-94747000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr1:94743800-94746200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr1:94744400-94747600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr1:94744800-94747600	Enhancers	HSMM	muscle
20	chr1:94744800-94747800	Enhancers	Muscle Satellite Cultured Cells	--
21	chr1:94744800-94747800	Enhancers	HUVEC	blood vessel
22	chr1:94745200-94746200	Weak transcription	Fetal Heart	heart
23	chr1:94745200-94746200	Weak transcription	NHDF-Ad	bronchial
24	chr1:94745200-94746800	Weak transcription	HSMMtube	muscle
25	chr1:94745200-94747400	Weak transcription	Fetal Stomach	stomach
26	chr1:94745200-94750400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr1:94745400-94746200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr1:94745400-94746200	Weak transcription	Osteobl	bone
29	chr1:94745800-94747600	Enhancers	Right Atrium	heart
30	chr1:94746000-94746800	Weak transcription	Adipose Nuclei	Adipose
31	chr1:94746000-94747000	Weak transcription	Spleen	Spleen
32	chr1:94746000-94747400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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