Variant report
| Variant | rs55837074 |
|---|---|
| Chromosome Location | chr22:31769775-31769776 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr22:31742050..31743658-chr22:31769266..31771167,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000100105 | Chromatin interaction |
| ENSG00000213888 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs11089495 | 0.80[EUR][1000 genomes] |
| rs11089496 | 0.92[EUR][1000 genomes] |
| rs11556237 | 0.87[EUR][1000 genomes] |
| rs11703005 | 0.93[EUR][1000 genomes] |
| rs11703576 | 0.92[EUR][1000 genomes] |
| rs11704523 | 0.88[EUR][1000 genomes] |
| rs2057951 | 0.84[EUR][1000 genomes] |
| rs2899161 | 0.82[EUR][1000 genomes] |
| rs3091392 | 0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4293639 | 0.82[EUR][1000 genomes] |
| rs57523999 | 0.83[EUR][1000 genomes] |
| rs5994386 | 0.82[EUR][1000 genomes] |
| rs5994387 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs5997942 | 0.81[EUR][1000 genomes] |
| rs5997948 | 0.81[EUR][1000 genomes] |
| rs5997956 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs5997959 | 0.87[EUR][1000 genomes] |
| rs5997965 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs60459126 | 0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs695269 | 0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs695455 | 0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs695630 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs695682 | 0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs695708 | 0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs713619 | 0.84[EUR][1000 genomes] |
| rs7285027 | 0.87[EUR][1000 genomes] |
| rs7285716 | 0.87[EUR][1000 genomes] |
| rs7287715 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs739428 | 0.83[EUR][1000 genomes] |
| rs8143159 | 0.88[EUR][1000 genomes] |
| rs9680708 | 0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834176 | chr22:31682426-31864701 | Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 52 gene(s) | inside rSNPs | diseases |
| 2 | esv1816779 | chr22:31743711-31797094 | Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 13 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
