Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:31740429..31742662-chr22:31772088..31774289,2	MCF-7	breast:
2	chr22:31746827..31749730-chr22:31771450..31774509,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100105	Chromatin interaction

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11089495	0.84[EUR][1000 genomes]
rs11089496	0.83[EUR][1000 genomes]
rs11703005	0.82[EUR][1000 genomes]
rs11703576	0.83[EUR][1000 genomes]
rs16989469	0.82[EUR][1000 genomes]
rs2057951	0.88[EUR][1000 genomes]
rs2899161	0.85[EUR][1000 genomes]
rs3091392	0.83[ASN][1000 genomes]
rs4293639	0.86[EUR][1000 genomes]
rs55837074	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5753523	0.80[EUR][1000 genomes]
rs5753554	0.83[EUR][1000 genomes]
rs5994386	0.86[EUR][1000 genomes]
rs5994387	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs5997924	0.82[EUR][1000 genomes]
rs5997942	0.85[EUR][1000 genomes]
rs5997948	0.85[EUR][1000 genomes]
rs5997956	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs5997959	0.90[EUR][1000 genomes]
rs5997965	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs695269	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs695455	0.87[ASN][1000 genomes]
rs695630	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs695682	0.83[ASN][1000 genomes]
rs695708	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs713619	0.88[EUR][1000 genomes]
rs7286926	0.80[EUR][1000 genomes]
rs7287715	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9680708	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834176	chr22:31682426-31864701	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	esv1816779	chr22:31743711-31797094	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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