Variant report

Variant	rs7287715
Chromosome Location	chr22:31763825-31763826
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:31740873..31743437-chr22:31763725..31765268,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000213888	Chromatin interaction
ENSG00000100105	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11089493	0.87[CEU][hapmap];0.81[TSI][hapmap]
rs11089495	0.87[CEU][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.86[MEX][hapmap];0.84[TSI][hapmap];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11089496	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1123705	0.81[CEU][hapmap]
rs11556237	1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.88[TSI][hapmap];0.87[EUR][1000 genomes]
rs11703005	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.92[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11703576	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11704156	1.00[CHD][hapmap];0.86[MEX][hapmap]
rs11704523	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.92[TSI][hapmap];0.88[EUR][1000 genomes]
rs12157877	0.86[CEU][hapmap]
rs16989459	1.00[CHD][hapmap];0.86[MEX][hapmap]
rs16989469	0.87[CEU][hapmap]
rs2057951	0.87[CEU][hapmap];0.84[TSI][hapmap];0.84[EUR][1000 genomes]
rs2413054	0.86[MEX][hapmap]
rs2899161	0.81[CEU][hapmap];0.88[TSI][hapmap];0.82[EUR][1000 genomes]
rs3091392	1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.84[MKK][hapmap];0.96[TSI][hapmap];0.80[EUR][1000 genomes]
rs4293639	0.82[EUR][1000 genomes]
rs4820972	1.00[CHD][hapmap];0.86[MEX][hapmap]
rs55837074	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57523999	0.83[EUR][1000 genomes]
rs5753629	1.00[ASN][1000 genomes]
rs5753682	0.86[MEX][hapmap]
rs5753683	0.80[MEX][hapmap];0.84[TSI][hapmap]
rs5994386	0.82[EUR][1000 genomes]
rs5994387	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5997917	0.93[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap]
rs5997921	0.81[CEU][hapmap];0.81[TSI][hapmap]
rs5997937	0.87[CEU][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.86[MEX][hapmap];0.84[TSI][hapmap]
rs5997942	0.93[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs5997948	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5997956	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5997959	0.87[CEU][hapmap];0.84[TSI][hapmap];0.87[EUR][1000 genomes]
rs5997965	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60459126	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs695269	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs695455	1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.96[TSI][hapmap];0.80[EUR][1000 genomes]
rs695630	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs695682	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs695708	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs713619	0.87[CEU][hapmap];0.84[TSI][hapmap];0.84[EUR][1000 genomes]
rs7285027	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7285716	0.87[EUR][1000 genomes]
rs7286926	0.87[CEU][hapmap]
rs738658	0.92[GIH][hapmap];0.86[MEX][hapmap];0.81[TSI][hapmap]
rs739428	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs8143159	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.92[TSI][hapmap];0.88[EUR][1000 genomes]
rs9680708	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834176	chr22:31682426-31864701	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	esv1816779	chr22:31743711-31797094	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7287715	DUSP18	cis	parietal	SCAN
rs7287715	SFI1	cis	cerebellum	SCAN
rs7287715	DUSP18	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31763400-31764000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr22:31763600-31764000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr22:31763800-31764000	Enhancers	HUES6 Cell Line	embryonic stem cell

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