Variant report

Variant	rs5997965
Chromosome Location	chr22:31760586-31760587
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11089493	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs11089495	0.93[CEU][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11089496	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1123705	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs1138706	0.81[EUR][1000 genomes]
rs11556237	0.93[CEU][hapmap];0.80[EUR][1000 genomes]
rs11703005	0.93[CEU][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11703576	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11704523	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs12157877	0.93[CEU][hapmap]
rs16989469	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs2057951	0.93[CEU][hapmap];0.92[EUR][1000 genomes]
rs2144387	0.81[CEU][hapmap]
rs2899161	0.87[CEU][hapmap];0.89[EUR][1000 genomes]
rs3091392	0.93[CEU][hapmap]
rs4293639	0.90[EUR][1000 genomes]
rs55837074	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56292834	0.82[EUR][1000 genomes]
rs5753523	0.84[EUR][1000 genomes]
rs5753554	0.87[EUR][1000 genomes]
rs5753629	1.00[ASN][1000 genomes]
rs5753683	0.86[CEU][hapmap]
rs5994386	0.90[EUR][1000 genomes]
rs5994387	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5997917	1.00[CEU][hapmap]
rs5997921	0.87[CEU][hapmap]
rs5997924	0.86[EUR][1000 genomes]
rs5997937	0.93[CEU][hapmap]
rs5997942	1.00[CEU][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs5997948	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5997956	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5997959	0.93[CEU][hapmap];0.94[EUR][1000 genomes]
rs60459126	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs695269	0.82[EUR][1000 genomes]
rs695455	0.93[CEU][hapmap]
rs695630	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs695682	0.93[CEU][hapmap]
rs713619	0.93[CEU][hapmap];0.92[EUR][1000 genomes]
rs7285027	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7285716	0.82[EUR][1000 genomes]
rs7286926	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs7287715	0.93[CEU][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs738658	0.82[CEU][hapmap]
rs739428	0.94[CEU][hapmap]
rs8143159	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs8595	0.87[CEU][hapmap]
rs9680708	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834176	chr22:31682426-31864701	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	esv1816779	chr22:31743711-31797094	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31744000-31762200	Weak transcription	Right Atrium	heart
2	chr22:31756400-31763800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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