Variant report

Variant	rs55843945
Chromosome Location	chr1:216892473-216892474
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10495033	0.86[EUR][1000 genomes]
rs11572672	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12033378	0.93[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs12034601	0.92[ASN][1000 genomes]
rs12037068	0.93[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1416611	0.90[EUR][1000 genomes]
rs17043513	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60800969	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73092176	0.80[AFR][1000 genomes];0.90[EUR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216868200-216894000	Weak transcription	Placenta	Placenta
2	chr1:216883600-216894600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr1:216884600-216895200	Weak transcription	Psoas Muscle	Psoas
4	chr1:216887400-216896400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:216887600-216894200	Enhancers	Fetal Heart	heart
6	chr1:216888400-216894600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr1:216891600-216897400	Active TSS	Right Atrium	heart
8	chr1:216891800-216892600	Active TSS	Right Ventricle	heart
9	chr1:216891800-216893400	Active TSS	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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