Variant report

Variant	rs1416611
Chromosome Location	chr1:216878458-216878459
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10495033	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11572672	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.96[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12033378	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.91[TSI][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12034601	0.81[CEU][hapmap];0.82[CHB][hapmap];0.95[GIH][hapmap];0.82[MKK][hapmap];0.88[TSI][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12037068	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.88[TSI][hapmap];0.80[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17043513	0.89[ASW][hapmap];0.82[CHB][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.82[YRI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55843945	0.90[EUR][1000 genomes]
rs60800969	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73092176	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7529655	0.82[GIH][hapmap];0.84[TSI][hapmap]
rs946467	0.94[CHB][hapmap]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216868200-216894000	Weak transcription	Placenta	Placenta
2	chr1:216874400-216879400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:216874800-216878800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:216874800-216879000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr1:216875000-216878800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr1:216875000-216879000	Weak transcription	Gastric	stomach
7	chr1:216875200-216879000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr1:216875200-216879200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr1:216875200-216879200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr1:216875200-216879200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr1:216875400-216878800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr1:216875400-216879000	Weak transcription	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links