Variant report

Variant	rs60800969
Chromosome Location	chr1:216890490-216890491
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10495033	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11572672	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12033378	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12034601	0.90[AMR][1000 genomes]
rs12037068	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1416611	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17043513	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55843945	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73092176	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216868200-216894000	Weak transcription	Placenta	Placenta
2	chr1:216883600-216894600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr1:216884600-216891800	Weak transcription	Right Ventricle	heart
4	chr1:216884600-216895200	Weak transcription	Psoas Muscle	Psoas
5	chr1:216887400-216896400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr1:216887600-216894200	Enhancers	Fetal Heart	heart
7	chr1:216888400-216894600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr1:216890400-216891400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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