Variant report

Variant	rs558443
Chromosome Location	chr10:90013195-90013196
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89620229..89621991-chr10:90012840..90014857,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs166976	0.80[EUR][1000 genomes]
rs17110523	0.90[EUR][1000 genomes]
rs3781196	0.90[EUR][1000 genomes]
rs3781197	0.90[EUR][1000 genomes]
rs7094781	0.89[EUR][1000 genomes]
rs737391	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7922058	0.90[EUR][1000 genomes]
rs9665166	0.95[EUR][1000 genomes]
rs999951	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467414	chr10:90006507-90042154	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89994400-90013800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:90004200-90013200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr10:90005200-90013400	Weak transcription	Pancreas	Pancrea
4	chr10:90005800-90017200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:90006400-90013600	Weak transcription	NH-A	brain
6	chr10:90009600-90013400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:90010400-90013400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr10:90011600-90016200	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr10:90012200-90014200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr10:90012200-90016600	Enhancers	Psoas Muscle	Psoas
11	chr10:90012400-90013200	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr10:90012400-90015200	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr10:90012400-90015800	Enhancers	Fetal Muscle Leg	muscle
14	chr10:90012600-90013400	Enhancers	Hela-S3	cervix
15	chr10:90012600-90013800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:90012600-90014200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr10:90012800-90014200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:90012800-90014400	Enhancers	Right Atrium	heart
19	chr10:90013000-90013800	Enhancers	Esophagus	oesophagus
20	chr10:90013000-90013800	Enhancers	A549	lung
21	chr10:90013000-90014400	Enhancers	HSMM	muscle
22	chr10:90013000-90014600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr10:90013000-90015800	Enhancers	Muscle Satellite Cultured Cells	--
24	chr10:90013000-90016000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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