Variant report

Variant	rs166976
Chromosome Location	chr10:90024599-90024600
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10509540	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12415812	0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs12416116	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17110523	0.87[ASN][1000 genomes]
rs2018705	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs286487	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3781196	0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs3781197	0.86[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs45585838	0.85[ASN][1000 genomes]
rs558443	0.80[EUR][1000 genomes]
rs60888743	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7068821	1.00[CEU][hapmap];0.87[JPT][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7094781	0.86[ASN][1000 genomes]
rs737391	0.94[ASN][1000 genomes]
rs7922058	0.81[ASN][1000 genomes]
rs9665166	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs999951	0.93[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467414	chr10:90006507-90042154	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90014200-90028400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:90014600-90025600	Weak transcription	Osteobl	bone
3	chr10:90021000-90025800	Weak transcription	Dnd41	blood
4	chr10:90023600-90025800	Weak transcription	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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