Variant report

Variant	rs7068821
Chromosome Location	chr10:90051035-90051036
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10509540	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs12415812	0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs12416116	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs166976	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17110523	0.87[ASN][1000 genomes]
rs2018705	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs286487	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3781196	0.82[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs3781197	0.88[CHB][hapmap];0.87[JPT][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs45585838	0.88[ASN][1000 genomes]
rs60888743	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7094781	0.89[ASN][1000 genomes]
rs7922058	0.82[CHB][hapmap];0.80[ASN][1000 genomes]
rs999951	0.82[CHB][hapmap];0.83[CHD][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7068821	LIPJ	cis	cerebellum	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90042800-90051200	Weak transcription	HSMM	muscle
2	chr10:90042800-90071600	Weak transcription	Psoas Muscle	Psoas
3	chr10:90043000-90051200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr10:90043000-90051200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:90048800-90051200	Weak transcription	Pancreas	Pancrea
6	chr10:90049000-90056800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr10:90049200-90051200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:90049400-90051200	Weak transcription	Primary B cells from cord blood	blood
9	chr10:90049400-90053000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:90049400-90053000	Weak transcription	NHDF-Ad	bronchial
11	chr10:90049600-90051600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr10:90049600-90051600	Weak transcription	Osteobl	bone
13	chr10:90049600-90051800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:90049800-90053000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:90050400-90052600	Enhancers	Primary B cells from peripheral blood	blood
16	chr10:90050600-90051600	Weak transcription	GM12878-XiMat	blood
17	chr10:90050800-90053200	Enhancers	Dnd41	blood
18	chr10:90051000-90052600	Enhancers	Fetal Thymus	thymus
19	chr10:90051000-90052600	Enhancers	Thymus	Thymus
20	chr10:90051000-90053200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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