Variant report

Variant	rs286487
Chromosome Location	chr10:90030119-90030120
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:90016811..90018452-chr10:90028419..90030893,2	MCF-7	breast:
2	chr10:90023314..90025859-chr10:90028654..90030958,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10509540	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12415812	0.80[ASN][1000 genomes]
rs12416116	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs166976	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17110523	0.89[ASN][1000 genomes]
rs2018705	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3781196	0.86[ASN][1000 genomes]
rs3781197	0.85[ASN][1000 genomes]
rs45585838	0.87[ASN][1000 genomes]
rs60888743	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7068821	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7094781	0.86[ASN][1000 genomes]
rs737391	0.86[ASN][1000 genomes]
rs7922058	0.83[ASN][1000 genomes]
rs9665166	0.86[ASN][1000 genomes]
rs999951	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467414	chr10:90006507-90042154	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90025800-90030600	Enhancers	Dnd41	blood
2	chr10:90026000-90031000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr10:90026400-90030800	Weak transcription	Adipose Nuclei	Adipose
4	chr10:90026800-90030200	Weak transcription	NHLF	lung
5	chr10:90026800-90030600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr10:90026800-90030600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr10:90026800-90030600	Weak transcription	Ovary	ovary
8	chr10:90026800-90030800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:90026800-90030800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:90026800-90030800	Weak transcription	Fetal Stomach	stomach
11	chr10:90026800-90031000	Weak transcription	Right Atrium	heart
12	chr10:90026800-90031400	Weak transcription	Spleen	Spleen
13	chr10:90026800-90034000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr10:90027000-90030200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr10:90027000-90030200	Weak transcription	Primary B cells from peripheral blood	blood
16	chr10:90027000-90030200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr10:90027200-90030600	Weak transcription	Primary B cells from cord blood	blood
18	chr10:90027200-90030600	Weak transcription	Fetal Muscle Leg	muscle
19	chr10:90027400-90030400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr10:90027600-90030600	Weak transcription	Thymus	Thymus
21	chr10:90028000-90030200	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr10:90028600-90030200	Enhancers	GM12878-XiMat	blood
23	chr10:90028600-90034800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr10:90028800-90032400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr10:90029200-90031000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr10:90029400-90031200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr10:90029600-90030400	Enhancers	Fetal Intestine Small	intestine
28	chr10:90029600-90032800	Enhancers	Fetal Thymus	thymus
29	chr10:90029800-90030200	Flanking Active TSS	Duodenum Mucosa	Duodenum
30	chr10:90029800-90030800	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr10:90029800-90030800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
32	chr10:90029800-90030800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr10:90029800-90031000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr10:90029800-90031600	Enhancers	Fetal Lung	lung
35	chr10:90029800-90032000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr10:90029800-90032200	Enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr10:90029800-90032200	Enhancers	HSMM	muscle
38	chr10:90029800-90032800	Enhancers	Primary T helper cells fromperipheralblood	blood
39	chr10:90029800-90032800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
40	chr10:90029800-90032800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr10:90029800-90033000	Enhancers	Primary T cells fromperipheralblood	blood
42	chr10:90030000-90030800	Enhancers	Primary T cells from cord blood	blood
43	chr10:90030000-90030800	Enhancers	NH-A	brain
44	chr10:90030000-90030800	Enhancers	NHDF-Ad	bronchial
45	chr10:90030000-90031000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
46	chr10:90030000-90031200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr10:90030000-90031200	Enhancers	Fetal Intestine Large	intestine
48	chr10:90030000-90031400	Enhancers	Placenta	Placenta
49	chr10:90030000-90031600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr10:90030000-90031600	Enhancers	Placenta Amnion	Placenta Amnion

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