Variant report

Variant	rs17110523
Chromosome Location	chr10:90031903-90031904
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10509540	0.85[ASN][1000 genomes]
rs12415812	0.85[CEU][hapmap];0.82[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs12416116	0.88[ASN][1000 genomes]
rs166976	0.87[ASN][1000 genomes]
rs2018705	0.86[ASN][1000 genomes]
rs286487	0.89[ASN][1000 genomes]
rs3781196	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3781197	0.82[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs45585838	0.96[ASN][1000 genomes]
rs558443	0.90[EUR][1000 genomes]
rs60888743	0.85[ASN][1000 genomes]
rs7068821	0.82[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs7094781	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs737391	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7922058	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9665166	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs999951	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467414	chr10:90006507-90042154	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90026800-90034000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr10:90028600-90034800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:90028800-90032400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:90029600-90032800	Enhancers	Fetal Thymus	thymus
5	chr10:90029800-90032000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr10:90029800-90032200	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr10:90029800-90032200	Enhancers	HSMM	muscle
8	chr10:90029800-90032800	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr10:90029800-90032800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr10:90029800-90032800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr10:90029800-90033000	Enhancers	Primary T cells fromperipheralblood	blood
12	chr10:90030000-90032000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:90030000-90032000	Enhancers	Small Intestine	intestine
14	chr10:90030000-90032000	Enhancers	HSMMtube	muscle
15	chr10:90030000-90032400	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr10:90030000-90032600	Enhancers	Osteobl	bone
17	chr10:90030200-90032000	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr10:90030200-90032000	Enhancers	Primary B cells from peripheral blood	blood
19	chr10:90030200-90032000	Enhancers	NHLF	lung
20	chr10:90030200-90032400	Enhancers	Duodenum Mucosa	Duodenum
21	chr10:90030200-90032400	Flanking Active TSS	GM12878-XiMat	blood
22	chr10:90030200-90032600	Enhancers	Muscle Satellite Cultured Cells	--
23	chr10:90030400-90032400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr10:90030400-90033000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
25	chr10:90030600-90032000	Enhancers	Primary hematopoietic stem cells	blood
26	chr10:90030600-90032000	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr10:90030600-90032000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr10:90030600-90032000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
29	chr10:90030600-90032000	Enhancers	Thymus	Thymus
30	chr10:90030600-90032000	Flanking Active TSS	Dnd41	blood
31	chr10:90030600-90032000	Enhancers	HMEC	breast
32	chr10:90030800-90032000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr10:90030800-90032000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr10:90030800-90032400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr10:90030800-90032800	Enhancers	Adipose Nuclei	Adipose
36	chr10:90031000-90032000	Enhancers	Colonic Mucosa	Colon
37	chr10:90031000-90032000	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr10:90031400-90032000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr10:90031400-90032000	Enhancers	Spleen	Spleen
40	chr10:90031400-90041200	Weak transcription	Fetal Stomach	stomach
41	chr10:90031600-90032000	Enhancers	Primary T cells from cord blood	blood
42	chr10:90031600-90032000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
43	chr10:90031600-90032000	Enhancers	Monocytes-CD14+_RO01746	blood
44	chr10:90031600-90032600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr10:90031600-90033000	Enhancers	NH-A	brain
46	chr10:90031600-90033400	Weak transcription	Fetal Lung	lung
47	chr10:90031600-90033600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
48	chr10:90031600-90033600	Enhancers	Primary T helper cells PMA-I stimulated	--
49	chr10:90031600-90034200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
50	chr10:90031800-90032000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

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