Variant report

Variant	rs999951
Chromosome Location	chr10:90036367-90036368
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10509540	0.84[ASN][1000 genomes]
rs12415812	0.83[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12416116	0.91[ASN][1000 genomes]
rs166976	0.86[ASN][1000 genomes]
rs17110523	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2018705	0.89[ASN][1000 genomes]
rs286487	0.86[ASN][1000 genomes]
rs3781196	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3781197	0.82[CEU][hapmap];0.93[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap];0.93[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs45585838	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs558443	0.90[EUR][1000 genomes]
rs60888743	0.88[ASN][1000 genomes]
rs7068821	0.82[CHB][hapmap];0.83[CHD][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs7094781	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs737391	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7922058	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[CHD][hapmap];0.83[JPT][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9665166	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467414	chr10:90006507-90042154	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90031400-90041200	Weak transcription	Fetal Stomach	stomach
2	chr10:90032000-90038800	Weak transcription	Thymus	Thymus
3	chr10:90032000-90039200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr10:90032000-90040600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:90032000-90042000	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr10:90032400-90038400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr10:90032400-90041000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:90032600-90041200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr10:90032800-90038800	Weak transcription	Fetal Thymus	thymus
10	chr10:90032800-90041000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr10:90032800-90042400	Weak transcription	Right Atrium	heart
12	chr10:90033000-90038000	Weak transcription	NH-A	brain
13	chr10:90033000-90038600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr10:90033000-90041000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr10:90033600-90038600	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr10:90033600-90039000	Weak transcription	Primary B cells from cord blood	blood
17	chr10:90034200-90038600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr10:90034400-90038200	Weak transcription	Fetal Lung	lung
19	chr10:90034800-90037800	Weak transcription	Dnd41	blood
20	chr10:90035600-90041200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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