Variant report

Variant	rs55861079
Chromosome Location	chr13:67586950-67586951
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs17195231	1.00[AFR][1000 genomes]
rs55693931	1.00[AMR][1000 genomes]
rs55900380	1.00[AFR][1000 genomes]
rs56143243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56296234	1.00[AMR][1000 genomes]
rs56372788	1.00[AFR][1000 genomes]
rs56404521	1.00[AMR][1000 genomes]
rs57896555	1.00[AMR][1000 genomes]
rs58145156	1.00[AMR][1000 genomes]
rs58708221	1.00[AMR][1000 genomes]
rs59894116	1.00[AMR][1000 genomes]
rs60474260	1.00[AMR][1000 genomes]
rs61078572	1.00[AMR][1000 genomes]
rs74093405	1.00[AMR][1000 genomes]
rs74093409	1.00[AMR][1000 genomes]
rs74093411	1.00[AMR][1000 genomes]
rs74093488	1.00[AMR][1000 genomes]
rs74093518	1.00[AFR][1000 genomes]
rs74093528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74093530	1.00[AFR][1000 genomes]
rs74093553	1.00[AMR][1000 genomes]
rs74093562	1.00[AMR][1000 genomes]
rs74093589	1.00[AMR][1000 genomes]
rs74093598	1.00[AMR][1000 genomes]
rs74093688	1.00[AMR][1000 genomes]
rs74095349	1.00[AMR][1000 genomes]
rs74095351	1.00[AMR][1000 genomes]
rs74095354	1.00[AMR][1000 genomes]
rs74095369	1.00[AMR][1000 genomes]
rs74095370	1.00[AMR][1000 genomes]
rs74095372	1.00[AMR][1000 genomes]
rs74095373	1.00[AMR][1000 genomes]
rs74095374	1.00[AMR][1000 genomes]
rs74095375	1.00[AMR][1000 genomes]
rs74095378	1.00[AMR][1000 genomes]
rs74095385	1.00[AMR][1000 genomes]
rs74095390	1.00[AMR][1000 genomes]
rs74095393	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530605	chr13:67126136-67697306	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv900407	chr13:67434161-67603745	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv832640	chr13:67460304-67635966	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv428604	chr13:67480426-67645030	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv900414	chr13:67515590-67701341	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1045093	chr13:67517932-67693875	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv541821	chr13:67517932-67693875	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv541822	chr13:67550756-67594021	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv430581	chr13:67572850-67762288	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67569800-67588200	Weak transcription	Brain Angular Gyrus	brain
2	chr13:67585200-67590800	Weak transcription	Brain Substantia Nigra	brain
3	chr13:67586200-67590600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr13:67586800-67587000	Enhancers	Brain Hippocampus Middle	brain

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