Variant report

Variant	rs58708221
Chromosome Location	chr13:67730669-67730670
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs55693931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55861079	1.00[AMR][1000 genomes]
rs56143243	1.00[AMR][1000 genomes]
rs56296234	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56404521	1.00[AMR][1000 genomes]
rs57896555	1.00[AMR][1000 genomes]
rs58145156	1.00[AMR][1000 genomes]
rs59894116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60474260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61078572	1.00[AMR][1000 genomes]
rs74093405	1.00[AMR][1000 genomes]
rs74093409	1.00[AMR][1000 genomes]
rs74093411	1.00[AMR][1000 genomes]
rs74093488	1.00[AMR][1000 genomes]
rs74093528	1.00[AMR][1000 genomes]
rs74093553	1.00[AMR][1000 genomes]
rs74093562	1.00[AMR][1000 genomes]
rs74093589	1.00[AMR][1000 genomes]
rs74093598	1.00[AMR][1000 genomes]
rs74093688	1.00[AMR][1000 genomes]
rs74095121	1.00[AMR][1000 genomes]
rs74095349	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74095351	1.00[AMR][1000 genomes]
rs74095354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74095369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74095370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74095371	1.00[AFR][1000 genomes]
rs74095372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74095373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74095374	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74095375	1.00[AMR][1000 genomes]
rs74095378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74095385	1.00[AMR][1000 genomes]
rs74095390	1.00[AMR][1000 genomes]
rs74095393	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv430581	chr13:67572850-67762288	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv430582	chr13:67589898-67762299	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1053514	chr13:67687520-67775011	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67722200-67735400	Weak transcription	Left Ventricle	heart
2	chr13:67725400-67731600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr13:67730000-67730800	Active TSS	Brain Angular Gyrus	brain
4	chr13:67730000-67731000	Active TSS	Brain Cingulate Gyrus	brain
5	chr13:67730200-67731000	Active TSS	Brain Anterior Caudate	brain
6	chr13:67730400-67730800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr13:67730400-67731000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr13:67730400-67731000	Active TSS	Brain Hippocampus Middle	brain
9	chr13:67730400-67732400	Weak transcription	A549	lung
10	chr13:67730600-67730800	Active TSS	Brain Substantia Nigra	brain
11	chr13:67730600-67730800	Active TSS	K562	blood
12	chr13:67730600-67731200	Active TSS	Brain Inferior Temporal Lobe	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links