Variant report

Variant	rs74093411
Chromosome Location	chr13:67748538-67748539
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs55693931	1.00[AMR][1000 genomes]
rs55861079	1.00[AMR][1000 genomes]
rs56143243	1.00[AMR][1000 genomes]
rs56296234	1.00[AMR][1000 genomes]
rs56404521	1.00[AMR][1000 genomes]
rs57896555	1.00[AMR][1000 genomes]
rs58145156	1.00[AMR][1000 genomes]
rs58708221	1.00[AMR][1000 genomes]
rs59894116	1.00[AMR][1000 genomes]
rs60474260	1.00[AMR][1000 genomes]
rs61078572	1.00[AMR][1000 genomes]
rs74093405	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74093409	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74093488	1.00[AMR][1000 genomes]
rs74093528	1.00[AMR][1000 genomes]
rs74093553	1.00[AMR][1000 genomes]
rs74093562	1.00[AMR][1000 genomes]
rs74093589	1.00[AMR][1000 genomes]
rs74093598	1.00[AMR][1000 genomes]
rs74093688	1.00[AMR][1000 genomes]
rs74095121	1.00[AMR][1000 genomes]
rs74095349	1.00[AMR][1000 genomes]
rs74095351	1.00[AMR][1000 genomes]
rs74095354	1.00[AMR][1000 genomes]
rs74095369	1.00[AMR][1000 genomes]
rs74095370	1.00[AMR][1000 genomes]
rs74095372	1.00[AMR][1000 genomes]
rs74095373	1.00[AMR][1000 genomes]
rs74095374	1.00[AMR][1000 genomes]
rs74095375	1.00[AMR][1000 genomes]
rs74095378	1.00[AMR][1000 genomes]
rs74095385	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74095390	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74095393	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv430581	chr13:67572850-67762288	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv430582	chr13:67589898-67762299	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1053514	chr13:67687520-67775011	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67731000-67751600	Weak transcription	Brain Anterior Caudate	brain
2	chr13:67731400-67795400	Weak transcription	Primary B cells from cord blood	blood
3	chr13:67735800-67748600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr13:67735800-67749200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr13:67747800-67749800	Enhancers	Brain Substantia Nigra	brain
6	chr13:67748400-67748800	Enhancers	Brain Angular Gyrus	brain
7	chr13:67748400-67748800	Enhancers	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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