Variant report

Variant	rs74093488
Chromosome Location	chr13:67806784-67806785
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:67804827..67806801-chr13:67815809..67818505,2	MCF-7	breast:
2	chr13:67804547..67807310-chr13:67807944..67812554,4	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs55693931	1.00[AMR][1000 genomes]
rs55861079	1.00[AMR][1000 genomes]
rs56143243	1.00[AMR][1000 genomes]
rs56296234	1.00[AMR][1000 genomes]
rs56404521	1.00[AMR][1000 genomes]
rs57896555	1.00[AMR][1000 genomes]
rs58145156	1.00[AMR][1000 genomes]
rs58708221	1.00[AMR][1000 genomes]
rs59894116	1.00[AMR][1000 genomes]
rs60474260	1.00[AMR][1000 genomes]
rs74093405	1.00[AMR][1000 genomes]
rs74093409	1.00[AMR][1000 genomes]
rs74093411	1.00[AMR][1000 genomes]
rs74093528	1.00[AMR][1000 genomes]
rs74093553	1.00[AMR][1000 genomes]
rs74093562	1.00[AMR][1000 genomes]
rs74093589	1.00[AMR][1000 genomes]
rs74093598	1.00[AMR][1000 genomes]
rs74095121	1.00[AMR][1000 genomes]
rs74095349	1.00[AMR][1000 genomes]
rs74095351	1.00[AMR][1000 genomes]
rs74095354	1.00[AMR][1000 genomes]
rs74095369	1.00[AMR][1000 genomes]
rs74095370	1.00[AMR][1000 genomes]
rs74095372	1.00[AMR][1000 genomes]
rs74095373	1.00[AMR][1000 genomes]
rs74095374	1.00[AMR][1000 genomes]
rs74095375	1.00[AMR][1000 genomes]
rs74095378	1.00[AMR][1000 genomes]
rs74095385	1.00[AMR][1000 genomes]
rs74095390	1.00[AMR][1000 genomes]
rs74095393	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67801200-67810000	Active TSS	Right Atrium	heart
2	chr13:67801600-67808400	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr13:67802400-67809400	Active TSS	A549	lung
4	chr13:67803200-67806800	Active TSS	Fetal Lung	lung
5	chr13:67804400-67811400	Active TSS	Stomach Smooth Muscle	stomach
6	chr13:67805400-67807200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr13:67805600-67810400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr13:67805800-67811200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr13:67806000-67806800	Weak transcription	Brain Hippocampus Middle	brain
10	chr13:67806000-67807200	Active TSS	Adipose Nuclei	Adipose
11	chr13:67806000-67809400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr13:67806200-67806800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr13:67806200-67806800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr13:67806200-67806800	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr13:67806200-67807400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr13:67806200-67807400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr13:67806200-67808000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr13:67806400-67807400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr13:67806600-67806800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
20	chr13:67806600-67806800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
21	chr13:67806600-67806800	Flanking Active TSS	Brain Substantia Nigra	brain
22	chr13:67806600-67806800	Enhancers	HSMM	muscle
23	chr13:67806600-67807000	Flanking Active TSS	Brain Cingulate Gyrus	brain
24	chr13:67806600-67807600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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