Variant report
| Variant | rs74095121 |
|---|---|
| Chromosome Location | chr13:67842541-67842542 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | STAT3 | chr13:67842498-67842565 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| RPSAP53 | TF binding region |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs55693931 | 1.00[AMR][1000 genomes] |
| rs56083961 | 1.00[AFR][1000 genomes] |
| rs56296234 | 1.00[AMR][1000 genomes] |
| rs56404521 | 1.00[AMR][1000 genomes] |
| rs57896555 | 1.00[AMR][1000 genomes] |
| rs58145156 | 1.00[AMR][1000 genomes] |
| rs58708221 | 1.00[AMR][1000 genomes] |
| rs59894116 | 1.00[AMR][1000 genomes] |
| rs60474260 | 1.00[AMR][1000 genomes] |
| rs74093405 | 1.00[AMR][1000 genomes] |
| rs74093409 | 1.00[AMR][1000 genomes] |
| rs74093411 | 1.00[AMR][1000 genomes] |
| rs74093488 | 1.00[AMR][1000 genomes] |
| rs74093562 | 1.00[AMR][1000 genomes] |
| rs74093589 | 1.00[AMR][1000 genomes] |
| rs74093598 | 1.00[AMR][1000 genomes] |
| rs74095349 | 1.00[AMR][1000 genomes] |
| rs74095351 | 1.00[AMR][1000 genomes] |
| rs74095354 | 1.00[AMR][1000 genomes] |
| rs74095369 | 1.00[AMR][1000 genomes] |
| rs74095370 | 1.00[AMR][1000 genomes] |
| rs74095372 | 1.00[AMR][1000 genomes] |
| rs74095373 | 1.00[AMR][1000 genomes] |
| rs74095374 | 1.00[AMR][1000 genomes] |
| rs74095375 | 1.00[AMR][1000 genomes] |
| rs74095378 | 1.00[AMR][1000 genomes] |
| rs74095385 | 1.00[AMR][1000 genomes] |
| rs74095390 | 1.00[AMR][1000 genomes] |
| rs74095393 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1035741 | chr13:67212973-68077950 | Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv541817 | chr13:67212973-68077950 | Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv562140 | chr13:67820503-67858550 | Weak transcription Enhancers Flanking Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv977255 | chr13:67840995-67844722 | Inactive region | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
