Variant report

Variant	rs55864076
Chromosome Location	chr6:110365307-110365308
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs2126495	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2126496	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2126497	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2169525	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2169526	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2361493	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4263616	0.87[AFR][1000 genomes]
rs56125429	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56818924	1.00[AMR][1000 genomes]
rs57366952	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57742381	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58305239	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58626152	1.00[AMR][1000 genomes]
rs58965262	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60431992	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60544167	1.00[AMR][1000 genomes]
rs61133699	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61476729	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61514346	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6907257	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6913197	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6922544	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6928253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6928417	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6928628	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6928636	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73762987	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73762989	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73762993	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73762994	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73762995	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73762998	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73762999	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73763000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73763002	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765604	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765606	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765608	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765609	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765610	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765611	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765612	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765613	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765614	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765615	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7742693	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017642	chr6:110252276-110386453	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv538417	chr6:110252276-110386453	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110361400-110365400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:110361600-110366600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:110362600-110365400	Weak transcription	Fetal Thymus	thymus
4	chr6:110364000-110365400	Weak transcription	Esophagus	oesophagus
5	chr6:110364000-110366000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr6:110364000-110366000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:110364200-110365800	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr6:110364200-110366000	Enhancers	Primary hematopoietic stem cells	blood
9	chr6:110364200-110366000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:110364400-110365600	Enhancers	Primary B cells from peripheral blood	blood
11	chr6:110364800-110365600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:110364800-110366000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:110365000-110366000	Enhancers	Placenta	Placenta
14	chr6:110365200-110365800	Enhancers	NHEK	skin
15	chr6:110365200-110366000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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