Variant report

Variant	rs56125429
Chromosome Location	chr6:110371591-110371592
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:110042492..110045032-chr6:110370097..110372632,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs2126495	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2126496	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2126497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2169525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2169526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2361493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4263616	0.95[AFR][1000 genomes]
rs55864076	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56818924	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57366952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57742381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58305239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58626152	1.00[AMR][1000 genomes]
rs58965262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60431992	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60544167	1.00[AMR][1000 genomes]
rs61133699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61476729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61514346	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6907257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6913197	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6922544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6928253	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6928417	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6928628	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6928636	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73762987	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73762989	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73762993	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73762994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73762995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73762998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73762999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73763000	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73763002	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765604	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765606	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765608	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765609	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765610	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765611	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765612	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765613	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765614	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765615	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7742693	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017642	chr6:110252276-110386453	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv538417	chr6:110252276-110386453	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110370800-110371600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr6:110370800-110371800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr6:110371200-110371600	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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