Variant report

Variant	rs55897661
Chromosome Location	chr3:82606816-82606817
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs56289276	1.00[AMR][1000 genomes]
rs56372487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57309560	1.00[AMR][1000 genomes]
rs58273882	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58393384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59078463	1.00[AMR][1000 genomes]
rs60854856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61210519	1.00[AMR][1000 genomes]
rs61390720	1.00[AMR][1000 genomes]
rs72895733	1.00[AMR][1000 genomes]
rs72895750	1.00[AMR][1000 genomes]
rs72895764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72897933	1.00[AMR][1000 genomes]
rs72897937	1.00[AMR][1000 genomes]
rs72897938	1.00[AMR][1000 genomes]
rs72897941	1.00[AMR][1000 genomes]
rs72897943	1.00[AMR][1000 genomes]
rs72897950	1.00[AMR][1000 genomes]
rs72897953	1.00[AMR][1000 genomes]
rs72907989	1.00[AMR][1000 genomes]
rs72907995	1.00[AMR][1000 genomes]
rs72907997	1.00[AMR][1000 genomes]
rs72908001	1.00[AMR][1000 genomes]
rs73841769	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013820	chr3:82175705-82968181	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv965384	chr3:82603863-82608331	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82603800-82607200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr3:82604200-82607200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr3:82604200-82607200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr3:82605000-82607800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr3:82605600-82607000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:82606000-82607200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:82606600-82607800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr3:82606600-82608000	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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