Variant report

Variant	rs73841769
Chromosome Location	chr3:82479412-82479413
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs55897661	1.00[AMR][1000 genomes]
rs56289276	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56372487	1.00[AMR][1000 genomes]
rs57309560	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58273882	1.00[AMR][1000 genomes]
rs58393384	1.00[AMR][1000 genomes]
rs59078463	1.00[AMR][1000 genomes]
rs60854856	1.00[AMR][1000 genomes]
rs61210519	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61390720	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72895733	1.00[AMR][1000 genomes]
rs72895750	1.00[AMR][1000 genomes]
rs72895764	1.00[AMR][1000 genomes]
rs72897933	1.00[AMR][1000 genomes]
rs72897937	1.00[AMR][1000 genomes]
rs72897938	1.00[AMR][1000 genomes]
rs72897941	1.00[AMR][1000 genomes]
rs72897943	1.00[AMR][1000 genomes]
rs72897950	1.00[AMR][1000 genomes]
rs72897953	1.00[AMR][1000 genomes]
rs72907989	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72907995	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72907997	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72908001	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008429	chr3:82089650-82510536	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv432460	chr3:82107110-82508010	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1013820	chr3:82175705-82968181	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82471200-82480400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr3:82473200-82480800	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr3:82477200-82480600	Enhancers	H1 Cell Line	embryonic stem cell
4	chr3:82477600-82480600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:82478600-82479600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr3:82478600-82479800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr3:82478600-82479800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr3:82478600-82479800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:82478600-82480400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr3:82479000-82480600	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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