Variant report

Variant	rs57309560
Chromosome Location	chr3:82468448-82468449
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs55897661	1.00[AMR][1000 genomes]
rs56289276	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56372487	1.00[AMR][1000 genomes]
rs58273882	1.00[AMR][1000 genomes]
rs58393384	1.00[AMR][1000 genomes]
rs59078463	1.00[AMR][1000 genomes]
rs60854856	1.00[AMR][1000 genomes]
rs61210519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61390720	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72895733	1.00[AMR][1000 genomes]
rs72895750	1.00[AMR][1000 genomes]
rs72895764	1.00[AMR][1000 genomes]
rs72897933	1.00[AMR][1000 genomes]
rs72897937	1.00[AMR][1000 genomes]
rs72897938	1.00[AMR][1000 genomes]
rs72897941	1.00[AMR][1000 genomes]
rs72897943	1.00[AMR][1000 genomes]
rs72897950	1.00[AMR][1000 genomes]
rs72897953	1.00[AMR][1000 genomes]
rs72907989	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72907995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72907997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72908001	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73841769	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008429	chr3:82089650-82510536	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv432460	chr3:82107110-82508010	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1013820	chr3:82175705-82968181	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82466200-82471200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr3:82466600-82472000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr3:82466600-82472200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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