Variant report
| Variant | rs72897953 |
|---|---|
| Chromosome Location | chr3:82623242-82623243 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs55897661 | 1.00[AMR][1000 genomes] |
| rs56289276 | 1.00[AMR][1000 genomes] |
| rs56372487 | 1.00[AMR][1000 genomes] |
| rs57309560 | 1.00[AMR][1000 genomes] |
| rs58273882 | 1.00[AMR][1000 genomes] |
| rs58393384 | 1.00[AMR][1000 genomes] |
| rs59078463 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60854856 | 1.00[AMR][1000 genomes] |
| rs61210519 | 1.00[AMR][1000 genomes] |
| rs61390720 | 1.00[AMR][1000 genomes] |
| rs72895733 | 1.00[AMR][1000 genomes] |
| rs72895750 | 1.00[AMR][1000 genomes] |
| rs72895764 | 1.00[AMR][1000 genomes] |
| rs72897933 | 1.00[AMR][1000 genomes] |
| rs72897937 | 1.00[AMR][1000 genomes] |
| rs72897938 | 1.00[AMR][1000 genomes] |
| rs72897941 | 1.00[AMR][1000 genomes] |
| rs72897943 | 1.00[AMR][1000 genomes] |
| rs72897950 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72907989 | 1.00[AMR][1000 genomes] |
| rs72907995 | 1.00[AMR][1000 genomes] |
| rs72907997 | 1.00[AMR][1000 genomes] |
| rs72908001 | 1.00[AMR][1000 genomes] |
| rs73841769 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1013820 | chr3:82175705-82968181 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:82616600-82624600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
