Variant report

Variant	rs55901601
Chromosome Location	chr6:128235841-128235842
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs55926927	1.00[AMR][1000 genomes]
rs56147226	1.00[AMR][1000 genomes]
rs56260230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57012172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57917462	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61073619	1.00[AMR][1000 genomes]
rs61477533	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73771858	1.00[AMR][1000 genomes]
rs73773927	1.00[AMR][1000 genomes]
rs73773928	1.00[AMR][1000 genomes]
rs73773929	1.00[AMR][1000 genomes]
rs73773932	1.00[AMR][1000 genomes]
rs73773934	1.00[AMR][1000 genomes]
rs73773937	1.00[AMR][1000 genomes]
rs73773942	1.00[AMR][1000 genomes]
rs73773959	1.00[AMR][1000 genomes]
rs73773964	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773969	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773970	1.00[AMR][1000 genomes]
rs73773971	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773979	1.00[AMR][1000 genomes]
rs73773980	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1024516	chr6:128184182-128298278	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128233200-128238400	Weak transcription	Fetal Thymus	thymus
2	chr6:128233600-128237600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:128233800-128236200	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr6:128233800-128237600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:128234000-128237600	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr6:128234600-128236600	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr6:128235600-128236000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:128235600-128236000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr6:128235600-128236000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:128235600-128236000	Enhancers	HMEC	breast
11	chr6:128235600-128236200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:128235600-128236600	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
13	chr6:128235600-128236800	Enhancers	Primary T cells from cord blood	blood
14	chr6:128235600-128236800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr6:128235600-128237400	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr6:128235800-128236000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
17	chr6:128235800-128245400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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