Variant report

Variant	rs73771858
Chromosome Location	chr6:128141042-128141043
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs55901601	1.00[AMR][1000 genomes]
rs55926927	1.00[AMR][1000 genomes]
rs56147226	1.00[AMR][1000 genomes]
rs56260230	1.00[AMR][1000 genomes]
rs57012172	1.00[AMR][1000 genomes]
rs57917462	1.00[AMR][1000 genomes]
rs61073619	1.00[AMR][1000 genomes]
rs61477533	1.00[AMR][1000 genomes]
rs73771867	0.89[AFR][1000 genomes]
rs73773927	1.00[AMR][1000 genomes]
rs73773928	1.00[AMR][1000 genomes]
rs73773929	1.00[AMR][1000 genomes]
rs73773932	1.00[AMR][1000 genomes]
rs73773934	1.00[AMR][1000 genomes]
rs73773937	1.00[AMR][1000 genomes]
rs73773942	1.00[AMR][1000 genomes]
rs73773959	1.00[AMR][1000 genomes]
rs73773964	1.00[AMR][1000 genomes]
rs73773969	1.00[AMR][1000 genomes]
rs73773970	1.00[AMR][1000 genomes]
rs73773971	1.00[AMR][1000 genomes]
rs73773979	1.00[AMR][1000 genomes]
rs73773980	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830799	chr6:128033100-128194511	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128127600-128145800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:128134000-128141600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:128134800-128180200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:128136800-128141800	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr6:128136800-128141800	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr6:128137000-128145000	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr6:128139400-128143800	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr6:128139400-128144000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr6:128139400-128145800	Enhancers	Primary T cells from cord blood	blood
10	chr6:128139600-128141800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr6:128139600-128178800	Weak transcription	Dnd41	blood
12	chr6:128140000-128145000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr6:128140200-128148800	Weak transcription	Thymus	Thymus
14	chr6:128140400-128158400	Strong transcription	Fetal Thymus	thymus
15	chr6:128140600-128142800	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr6:128141000-128141800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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