Variant report

Variant	rs73773927
Chromosome Location	chr6:128202225-128202226
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs55901601	1.00[AMR][1000 genomes]
rs55926927	1.00[AMR][1000 genomes]
rs56147226	1.00[AMR][1000 genomes]
rs56260230	1.00[AMR][1000 genomes]
rs57012172	1.00[AMR][1000 genomes]
rs57917462	1.00[AMR][1000 genomes]
rs61073619	1.00[AMR][1000 genomes]
rs61477533	1.00[AMR][1000 genomes]
rs73771858	1.00[AMR][1000 genomes]
rs73773928	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773929	1.00[AMR][1000 genomes]
rs73773932	1.00[AMR][1000 genomes]
rs73773934	1.00[AMR][1000 genomes]
rs73773937	1.00[AMR][1000 genomes]
rs73773942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773964	1.00[AMR][1000 genomes]
rs73773969	1.00[AMR][1000 genomes]
rs73773970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773971	1.00[AMR][1000 genomes]
rs73773979	1.00[AMR][1000 genomes]
rs73773980	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1024516	chr6:128184182-128298278	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128196600-128211600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:128196800-128204000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:128197200-128208200	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr6:128198200-128204600	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr6:128199400-128202400	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr6:128199600-128203000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr6:128201000-128205200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr6:128201000-128214600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr6:128201200-128203000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr6:128201200-128205400	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr6:128201200-128207200	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr6:128201400-128205200	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr6:128201400-128205200	Enhancers	Primary T cells from cord blood	blood
14	chr6:128201400-128206200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr6:128201600-128204400	Enhancers	Dnd41	blood
16	chr6:128201600-128205000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:128201600-128205200	Weak transcription	Thymus	Thymus
18	chr6:128201600-128205400	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr6:128202000-128208600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr6:128202200-128205000	Weak transcription	Fetal Thymus	thymus

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