Variant report

Variant	rs73773959
Chromosome Location	chr6:128228056-128228057
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs55901601	1.00[AMR][1000 genomes]
rs55926927	1.00[AMR][1000 genomes]
rs56147226	1.00[AMR][1000 genomes]
rs56260230	1.00[AMR][1000 genomes]
rs57012172	1.00[AMR][1000 genomes]
rs57917462	1.00[AMR][1000 genomes]
rs61073619	1.00[AMR][1000 genomes]
rs61477533	1.00[AMR][1000 genomes]
rs73771858	1.00[AMR][1000 genomes]
rs73773927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773928	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773929	1.00[AMR][1000 genomes]
rs73773932	1.00[AMR][1000 genomes]
rs73773934	1.00[AMR][1000 genomes]
rs73773937	1.00[AMR][1000 genomes]
rs73773942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773964	1.00[AMR][1000 genomes]
rs73773969	1.00[AMR][1000 genomes]
rs73773970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773971	1.00[AMR][1000 genomes]
rs73773979	1.00[AMR][1000 genomes]
rs73773980	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1024516	chr6:128184182-128298278	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128222600-128228600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:128223600-128228600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr6:128224000-128235600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr6:128224400-128228600	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr6:128225600-128228600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:128225600-128232800	Weak transcription	Fetal Thymus	thymus
7	chr6:128226400-128228200	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr6:128226800-128228600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr6:128227000-128228200	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr6:128227800-128228200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr6:128227800-128228200	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr6:128228000-128228400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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