Variant report

Variant	rs55906351
Chromosome Location	chr7:86283938-86283939
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs55940297	0.98[AFR][1000 genomes]
rs56699849	0.88[AFR][1000 genomes]
rs58628492	0.81[AFR][1000 genomes]
rs61383608	1.00[AFR][1000 genomes]
rs61398217	0.95[AFR][1000 genomes]
rs73398435	0.85[AFR][1000 genomes]
rs73704924	0.84[AFR][1000 genomes]
rs73704926	0.84[AFR][1000 genomes]
rs73704938	0.91[AFR][1000 genomes]
rs73704951	1.00[AFR][1000 genomes]
rs73704953	0.95[AFR][1000 genomes]
rs73704959	1.00[AFR][1000 genomes]
rs73704960	1.00[AFR][1000 genomes]
rs73704986	1.00[AFR][1000 genomes]
rs73704987	1.00[AFR][1000 genomes]
rs73704994	0.98[AFR][1000 genomes]
rs73704995	0.98[AFR][1000 genomes]
rs73704996	0.98[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025032	chr7:86032479-86642973	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831053	chr7:86268171-86440999	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86280600-86289400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:86281000-86288800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:86282600-86284200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr7:86283200-86284000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr7:86283200-86284000	Flanking Active TSS	Brain Anterior Caudate	brain
6	chr7:86283200-86284000	Flanking Active TSS	Brain Hippocampus Middle	brain
7	chr7:86283200-86284000	Enhancers	Fetal Lung	lung
8	chr7:86283600-86297200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:86283800-86284000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:86283800-86284000	Enhancers	Adipose Nuclei	Adipose
11	chr7:86283800-86284000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr7:86283800-86284000	Flanking Active TSS	Brain Substantia Nigra	brain
13	chr7:86283800-86284600	Enhancers	Brain Cingulate Gyrus	brain
14	chr7:86283800-86284600	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr7:86283800-86285200	Enhancers	Brain Angular Gyrus	brain
16	chr7:86283800-86286800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr7:86283800-86289200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:86283800-86297800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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