Variant report

Variant	rs73704938
Chromosome Location	chr7:86275030-86275031
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:86262421..86264345-chr7:86274869..86277224,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs55906351	0.91[AFR][1000 genomes]
rs55940297	0.88[AFR][1000 genomes]
rs56699849	0.98[AFR][1000 genomes]
rs58628492	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61383608	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61398217	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73396494	1.00[AMR][1000 genomes]
rs73398435	1.00[AMR][1000 genomes]
rs73704920	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73704924	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73704926	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73704951	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73704953	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73704959	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73704960	0.91[AFR][1000 genomes]
rs73704986	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73704987	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73704994	0.88[AFR][1000 genomes]
rs73704995	0.88[AFR][1000 genomes]
rs73704996	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025032	chr7:86032479-86642973	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831053	chr7:86268171-86440999	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86272600-86275200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
2	chr7:86272600-86275400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:86272600-86275600	Active TSS	Fetal Brain Male	brain
4	chr7:86272600-86277200	Active TSS	Brain Hippocampus Middle	brain
5	chr7:86272600-86277200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
6	chr7:86272600-86277400	Active TSS	Brain Angular Gyrus	brain
7	chr7:86272600-86277800	Active TSS	Brain Cingulate Gyrus	brain
8	chr7:86272600-86278000	Active TSS	Brain Anterior Caudate	brain
9	chr7:86272600-86278000	Active TSS	Brain Inferior Temporal Lobe	brain
10	chr7:86272800-86275800	Active TSS	Brain Substantia Nigra	brain
11	chr7:86273000-86275400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
12	chr7:86273400-86275400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
13	chr7:86273400-86275600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
14	chr7:86273800-86275200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr7:86274600-86277600	Active TSS	Fetal Brain Female	brain
16	chr7:86274600-86283200	Weak transcription	Right Atrium	heart
17	chr7:86274800-86275200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr7:86274800-86275400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr7:86274800-86276000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr7:86274800-86276000	Active TSS	Brain Germinal Matrix	brain
21	chr7:86275000-86275400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr7:86275000-86275400	Active TSS	H9 Cell Line	embryonic stem cell
23	chr7:86275000-86275600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
24	chr7:86275000-86276000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell

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