Variant report

Variant	rs73704924
Chromosome Location	chr7:86262430-86262431
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs55906351	0.84[AFR][1000 genomes]
rs55940297	0.82[AFR][1000 genomes]
rs56699849	0.95[AFR][1000 genomes]
rs58628492	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61383608	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61398217	1.00[AMR][1000 genomes]
rs73396494	1.00[AMR][1000 genomes]
rs73398435	1.00[AMR][1000 genomes]
rs73704920	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73704926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73704938	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73704951	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73704953	1.00[AMR][1000 genomes]
rs73704959	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73704960	0.84[AFR][1000 genomes]
rs73704986	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73704987	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73704994	0.82[AFR][1000 genomes]
rs73704995	0.82[AFR][1000 genomes]
rs73704996	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025032	chr7:86032479-86642973	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1017470	chr7:86221308-86263909	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86262000-86263200	Weak transcription	Brain Hippocampus Middle	brain
2	chr7:86262200-86263200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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