Variant report

Variant	rs61398217
Chromosome Location	chr7:86295358-86295359
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs55906351	0.95[AFR][1000 genomes]
rs55940297	0.93[AFR][1000 genomes]
rs56699849	0.83[AFR][1000 genomes]
rs58628492	1.00[AMR][1000 genomes]
rs61383608	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73396494	1.00[AMR][1000 genomes]
rs73398435	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73704920	1.00[AMR][1000 genomes]
rs73704924	1.00[AMR][1000 genomes]
rs73704926	1.00[AMR][1000 genomes]
rs73704938	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73704951	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73704953	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73704959	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73704960	0.95[AFR][1000 genomes]
rs73704986	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73704987	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73704994	0.93[AFR][1000 genomes]
rs73704995	0.93[AFR][1000 genomes]
rs73704996	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025032	chr7:86032479-86642973	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831053	chr7:86268171-86440999	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86283600-86297200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:86283800-86297800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:86288600-86299800	Enhancers	Brain Anterior Caudate	brain
4	chr7:86291800-86297200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:86292400-86300000	Enhancers	Brain Substantia Nigra	brain
6	chr7:86292400-86300200	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr7:86292600-86300200	Enhancers	Brain Hippocampus Middle	brain
8	chr7:86293600-86295400	Weak transcription	Brain Angular Gyrus	brain
9	chr7:86294200-86295600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr7:86294200-86297000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:86294400-86295600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr7:86295200-86298800	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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