Variant report

Variant	rs55906439
Chromosome Location	chr4:81750806-81750807
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17004981	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56015804	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58711748	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59437917	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59718772	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59881454	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61327507	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6847820	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6849086	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73829105	1.00[EUR][1000 genomes]
rs73829106	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73829159	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73832429	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7656162	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7662939	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7675096	1.00[AMR][1000 genomes]
rs7693520	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002776	chr4:81480374-81802614	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv537154	chr4:81480374-81802614	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3518601	chr4:81523238-81831941	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3518602	chr4:81523354-81831976	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81746200-81751600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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