Variant report
| Variant | rs56015804 |
|---|---|
| Chromosome Location | chr4:81600784-81600785 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs17004949 | 1.00[EUR][1000 genomes] |
| rs17004951 | 1.00[EUR][1000 genomes] |
| rs17004981 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55906439 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58711748 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59437917 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59718772 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59881454 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61327507 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6847820 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6849086 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73829105 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73829106 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73829159 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73832425 | 1.00[EUR][1000 genomes] |
| rs73832427 | 1.00[EUR][1000 genomes] |
| rs73832429 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7656162 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7662939 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7669743 | 1.00[EUR][1000 genomes] |
| rs7690311 | 1.00[EUR][1000 genomes] |
| rs7693520 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7699161 | 1.00[EUR][1000 genomes] |
| rs966860 | 1.00[EUR][1000 genomes] |
| rs966861 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1002776 | chr4:81480374-81802614 | Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv537154 | chr4:81480374-81802614 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv3518601 | chr4:81523238-81831941 | Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv3518602 | chr4:81523354-81831976 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | esv3381861 | chr4:81587822-81608017 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:81599000-81601200 | Enhancers | Primary T cells from cord blood | blood |
| 2 | chr4:81600200-81601200 | Weak transcription | Primary T helper naive cells fromperipheralblood | blood |
