Variant report

Variant	rs58711748
Chromosome Location	chr4:81549564-81549565
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs17004938	0.89[AFR][1000 genomes]
rs17004949	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17004951	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17004981	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55906439	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56015804	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59437917	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59718772	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59881454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61327507	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6816294	0.94[AFR][1000 genomes]
rs6847820	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6849086	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73829105	1.00[EUR][1000 genomes]
rs73829106	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73829159	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73832425	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73832427	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73832429	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7656162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7662939	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7665568	0.91[AFR][1000 genomes]
rs7669743	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7690311	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7693520	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7699161	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs966860	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs966861	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002776	chr4:81480374-81802614	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv537154	chr4:81480374-81802614	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3518601	chr4:81523238-81831941	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3518602	chr4:81523354-81831976	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv964276	chr4:81543380-81555021	Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81545200-81556600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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