Variant report

Variant	rs6816294
Chromosome Location	chr4:81537006-81537007
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17004938	0.89[AFR][1000 genomes]
rs17004949	0.91[AFR][1000 genomes]
rs17004951	0.91[AFR][1000 genomes]
rs17004953	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17004954	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58711748	0.94[AFR][1000 genomes]
rs59881454	0.94[AFR][1000 genomes]
rs6847820	0.91[AFR][1000 genomes]
rs73832425	0.92[AFR][1000 genomes]
rs73832427	0.94[AFR][1000 genomes]
rs73832429	1.00[AFR][1000 genomes]
rs7656162	0.94[AFR][1000 genomes]
rs7665568	0.91[AFR][1000 genomes]
rs7669743	0.91[AFR][1000 genomes]
rs7690311	0.92[AFR][1000 genomes]
rs7699161	0.92[AFR][1000 genomes]
rs966860	0.91[AFR][1000 genomes]
rs966861	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002776	chr4:81480374-81802614	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv537154	chr4:81480374-81802614	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3518601	chr4:81523238-81831941	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3518602	chr4:81523354-81831976	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3507556	chr4:81529778-81537026	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3488564	chr4:81529978-81537076	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81536800-81537200	Enhancers	Fetal Intestine Large	intestine
2	chr4:81536800-81537200	Enhancers	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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