Variant report

Variant	rs7669743
Chromosome Location	chr4:81501656-81501657
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:81499228..81501687-chr4:81505021..81507173,2	K562	blood:
2	chr4:81486208..81487933-chr4:81500927..81502953,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs17004897	1.00[AMR][1000 genomes]
rs17004938	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17004949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17004951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17004981	1.00[EUR][1000 genomes]
rs1874335	1.00[AMR][1000 genomes]
rs56015804	1.00[EUR][1000 genomes]
rs56062404	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58112950	1.00[AMR][1000 genomes]
rs58711748	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59437917	1.00[EUR][1000 genomes]
rs59718772	1.00[EUR][1000 genomes]
rs59881454	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60366641	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60660007	1.00[AMR][1000 genomes]
rs60770229	0.84[AFR][1000 genomes]
rs61327507	1.00[EUR][1000 genomes]
rs6816294	0.91[AFR][1000 genomes]
rs6847820	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73829105	1.00[EUR][1000 genomes]
rs73829106	1.00[EUR][1000 genomes]
rs73829294	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832425	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73832427	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73832428	1.00[AMR][1000 genomes]
rs73832429	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7656162	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7662939	1.00[EUR][1000 genomes]
rs7665568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7690311	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7693520	1.00[EUR][1000 genomes]
rs7699161	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs966860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs966861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002776	chr4:81480374-81802614	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv537154	chr4:81480374-81802614	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81501200-81502200	Enhancers	Fetal Kidney	kidney
2	chr4:81501400-81502000	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr4:81501400-81502000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr4:81501400-81502200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr4:81501400-81502400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:81501400-81502600	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr4:81501400-81504000	Enhancers	Primary T cells from cord blood	blood
8	chr4:81501600-81502400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr4:81501600-81502600	Enhancers	Primary hematopoietic stem cells	blood
10	chr4:81501600-81502600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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