Variant report

Variant	rs17004897
Chromosome Location	chr4:81354999-81355000
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17004938	1.00[AMR][1000 genomes]
rs17004949	1.00[AMR][1000 genomes]
rs17004951	1.00[AMR][1000 genomes]
rs1874335	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56062404	1.00[AMR][1000 genomes]
rs57326646	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58112950	1.00[AMR][1000 genomes]
rs60366641	1.00[AMR][1000 genomes]
rs60660007	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6811709	1.00[AMR][1000 genomes]
rs6813734	1.00[AMR][1000 genomes]
rs73829294	1.00[AMR][1000 genomes]
rs73832425	1.00[AMR][1000 genomes]
rs73832427	1.00[AMR][1000 genomes]
rs73832428	1.00[AMR][1000 genomes]
rs7665568	1.00[AMR][1000 genomes]
rs7669743	1.00[AMR][1000 genomes]
rs7690311	1.00[AMR][1000 genomes]
rs7699161	1.00[AMR][1000 genomes]
rs966860	1.00[AMR][1000 genomes]
rs966861	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999334	chr4:81324288-81409040	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv537153	chr4:81324288-81409040	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81352200-81355400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr4:81353000-81360600	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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