Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs17004897	1.00[AMR][1000 genomes]
rs17004938	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17004949	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17004951	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1874335	1.00[AMR][1000 genomes]
rs56062404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57326646	1.00[AMR][1000 genomes]
rs58112950	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60660007	1.00[AMR][1000 genomes]
rs60770229	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6811392	1.00[EUR][1000 genomes]
rs6813734	1.00[AMR][1000 genomes]
rs6834355	1.00[EUR][1000 genomes]
rs72873874	1.00[EUR][1000 genomes]
rs73829294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73832425	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832427	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832428	1.00[AMR][1000 genomes]
rs7665568	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7669743	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7690311	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7699161	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs966860	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs966861	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013945	chr4:81410029-81454166	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81430400-81434200	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr4:81430400-81434400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr4:81430600-81434200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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