Variant report

Variant	rs56062404
Chromosome Location	chr4:81413218-81413219
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:81412527..81415093-chr4:81416583..81419281,3	K562	blood:
2	chr4:81412527..81415093-chr4:81416891..81419281,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs17004897	1.00[AMR][1000 genomes]
rs17004938	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17004949	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17004951	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1874335	1.00[AMR][1000 genomes]
rs28513703	1.00[EUR][1000 genomes]
rs28595481	1.00[EUR][1000 genomes]
rs35194320	1.00[EUR][1000 genomes]
rs57326646	1.00[AMR][1000 genomes]
rs58112950	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60366641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60660007	1.00[AMR][1000 genomes]
rs60770229	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6811392	1.00[EUR][1000 genomes]
rs6811709	1.00[AMR][1000 genomes]
rs6813734	1.00[AMR][1000 genomes]
rs6834355	1.00[EUR][1000 genomes]
rs72873874	1.00[EUR][1000 genomes]
rs73829294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73832425	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832427	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832428	1.00[AMR][1000 genomes]
rs7665568	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7669743	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7690311	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7699161	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs966860	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs966861	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013945	chr4:81410029-81454166	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81407600-81421800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:81411000-81416600	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr4:81411400-81413400	Weak transcription	Primary B cells from peripheral blood	blood
4	chr4:81412400-81416200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr4:81412400-81416800	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr4:81412600-81413800	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr4:81412600-81413800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr4:81412600-81413800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr4:81412600-81414000	Enhancers	Primary T cells from cord blood	blood
10	chr4:81412600-81414000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr4:81412600-81415600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr4:81412600-81417200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr4:81412600-81417200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr4:81412800-81413400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr4:81412800-81417400	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr4:81413200-81414800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr4:81413200-81415000	Enhancers	Fetal Thymus	thymus
18	chr4:81413200-81417200	Enhancers	Primary T cells fromperipheralblood	blood

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