Variant report

Variant	rs55930229
Chromosome Location	chr4:147162040-147162041
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:146952161..146953880-chr4:147160452..147162957,2	MCF-7	breast:
2	chr4:147150281..147153260-chr4:147161071..147162897,2	K562	blood:
3	chr4:147096162..147099903-chr4:147161380..147165203,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164167	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1550081	1.00[EUR][1000 genomes]
rs17021280	1.00[EUR][1000 genomes]
rs55782738	1.00[EUR][1000 genomes]
rs55853628	1.00[EUR][1000 genomes]
rs56099921	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57083284	1.00[EUR][1000 genomes]
rs58863965	1.00[EUR][1000 genomes]
rs59148890	1.00[EUR][1000 genomes]
rs59361076	1.00[EUR][1000 genomes]
rs59424517	1.00[EUR][1000 genomes]
rs61466735	1.00[EUR][1000 genomes]
rs72950636	1.00[EUR][1000 genomes]
rs73852859	1.00[EUR][1000 genomes]
rs73855113	1.00[EUR][1000 genomes]
rs73855116	1.00[EUR][1000 genomes]
rs73855118	1.00[EUR][1000 genomes]
rs73855119	1.00[EUR][1000 genomes]
rs73855120	1.00[EUR][1000 genomes]
rs73855121	1.00[EUR][1000 genomes]
rs73855124	1.00[EUR][1000 genomes]
rs73855125	1.00[EUR][1000 genomes]
rs73855129	1.00[EUR][1000 genomes]
rs73855141	1.00[EUR][1000 genomes]
rs73855509	1.00[EUR][1000 genomes]
rs73855522	1.00[EUR][1000 genomes]
rs73855523	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461675	chr4:147116864-147768206	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv595651	chr4:147116864-147768206	Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147157200-147163400	Weak transcription	Right Ventricle	heart
2	chr4:147157600-147162200	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr4:147157600-147162200	Weak transcription	NHLF	lung
4	chr4:147157600-147162600	Weak transcription	Fetal Stomach	stomach
5	chr4:147157800-147162600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr4:147157800-147162800	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr4:147158000-147162200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:147158000-147162200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr4:147158000-147164400	Weak transcription	Lung	lung
10	chr4:147158200-147162800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr4:147158600-147162200	Weak transcription	Fetal Muscle Leg	muscle
12	chr4:147158800-147162800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr4:147159400-147162200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr4:147159400-147162200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr4:147160400-147162600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:147160400-147162800	Weak transcription	Brain Substantia Nigra	brain
17	chr4:147160600-147162200	Weak transcription	Adipose Nuclei	Adipose
18	chr4:147160600-147164400	Weak transcription	Spleen	Spleen
19	chr4:147160800-147162600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr4:147160800-147163400	Weak transcription	Right Atrium	heart
21	chr4:147161400-147162800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr4:147161600-147163400	Weak transcription	Left Ventricle	heart
23	chr4:147161800-147162200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr4:147161800-147162400	Enhancers	HUVEC	blood vessel
25	chr4:147161800-147162800	Enhancers	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links