Variant report

Variant	rs73855119
Chromosome Location	chr4:147184697-147184698
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1550081	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17021280	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55782738	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55853628	1.00[EUR][1000 genomes]
rs55930229	1.00[EUR][1000 genomes]
rs56099921	1.00[EUR][1000 genomes]
rs57083284	1.00[EUR][1000 genomes]
rs58863965	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59148890	1.00[EUR][1000 genomes]
rs59361076	1.00[EUR][1000 genomes]
rs59424517	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61466735	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72950636	1.00[EUR][1000 genomes]
rs73852859	1.00[EUR][1000 genomes]
rs73855113	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73855116	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73855118	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73855120	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73855121	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73855124	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73855125	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73855129	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73855141	1.00[EUR][1000 genomes]
rs73855509	1.00[EUR][1000 genomes]
rs73855522	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73855523	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461675	chr4:147116864-147768206	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv595651	chr4:147116864-147768206	Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147164800-147207200	Weak transcription	Thymus	Thymus
2	chr4:147165000-147207200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr4:147165200-147207200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr4:147166000-147207800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr4:147166800-147186400	Weak transcription	Spleen	Spleen
6	chr4:147166800-147187200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:147166800-147190000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr4:147166800-147207200	Weak transcription	Right Ventricle	heart
9	chr4:147167000-147207200	Weak transcription	Aorta	Aorta
10	chr4:147167000-147217600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr4:147167400-147185800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr4:147167400-147209000	Weak transcription	Ovary	ovary
13	chr4:147167800-147188600	Weak transcription	Pancreas	Pancrea
14	chr4:147170000-147196400	Weak transcription	Fetal Intestine Small	intestine
15	chr4:147174200-147206800	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr4:147174400-147231200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr4:147174800-147207800	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr4:147174800-147218400	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr4:147175000-147196400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr4:147175400-147225400	Weak transcription	Brain Hippocampus Middle	brain
21	chr4:147175800-147206800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr4:147176800-147207200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr4:147177400-147213400	Weak transcription	Primary B cells from peripheral blood	blood
24	chr4:147177600-147187400	Weak transcription	Fetal Brain Female	brain
25	chr4:147177800-147188200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr4:147178000-147186200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr4:147178000-147186400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr4:147178000-147195800	Weak transcription	NH-A	brain
29	chr4:147178000-147200400	Weak transcription	Fetal Lung	lung
30	chr4:147178200-147189200	Weak transcription	HSMM	muscle
31	chr4:147178200-147207800	Weak transcription	Primary B cells from cord blood	blood
32	chr4:147179000-147207200	Weak transcription	Fetal Stomach	stomach
33	chr4:147179200-147190800	Weak transcription	Duodenum Mucosa	Duodenum
34	chr4:147179200-147206800	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr4:147179200-147207200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr4:147179400-147185800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr4:147179400-147205400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr4:147179400-147206800	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr4:147179400-147217200	Weak transcription	Left Ventricle	heart
40	chr4:147179600-147214200	Weak transcription	Dnd41	blood
41	chr4:147180000-147188200	Weak transcription	Adipose Nuclei	Adipose
42	chr4:147180200-147196400	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr4:147180400-147206600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr4:147180400-147233200	Weak transcription	Liver	Liver
45	chr4:147180600-147208200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr4:147182200-147187400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr4:147182400-147188400	Weak transcription	GM12878-XiMat	blood
48	chr4:147182600-147185600	Weak transcription	Psoas Muscle	Psoas
49	chr4:147182600-147207200	Weak transcription	Fetal Muscle Trunk	muscle
50	chr4:147182800-147191600	Weak transcription	Gastric	stomach

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