Variant report
| Variant | rs73855509 |
|---|---|
| Chromosome Location | chr4:147094023-147094024 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | POLR2A | chr4:147093792-147094090 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| LSM6 | TF binding region |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1550081 | 1.00[EUR][1000 genomes] |
| rs17021280 | 1.00[EUR][1000 genomes] |
| rs55782738 | 1.00[EUR][1000 genomes] |
| rs55930229 | 1.00[EUR][1000 genomes] |
| rs56099921 | 1.00[EUR][1000 genomes] |
| rs57083284 | 1.00[EUR][1000 genomes] |
| rs58863965 | 1.00[EUR][1000 genomes] |
| rs59424517 | 1.00[EUR][1000 genomes] |
| rs61466735 | 1.00[EUR][1000 genomes] |
| rs72950636 | 1.00[EUR][1000 genomes] |
| rs73855113 | 1.00[EUR][1000 genomes] |
| rs73855116 | 1.00[EUR][1000 genomes] |
| rs73855118 | 1.00[EUR][1000 genomes] |
| rs73855119 | 1.00[EUR][1000 genomes] |
| rs73855120 | 1.00[EUR][1000 genomes] |
| rs73855121 | 1.00[EUR][1000 genomes] |
| rs73855124 | 1.00[EUR][1000 genomes] |
| rs73855125 | 1.00[EUR][1000 genomes] |
| rs73855129 | 1.00[EUR][1000 genomes] |
| rs73855141 | 1.00[EUR][1000 genomes] |
| rs73855522 | 1.00[EUR][1000 genomes] |
| rs73855523 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv461674 | chr4:147047072-147143572 | Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv595650 | chr4:147047072-147143572 | Genic enhancers Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv1018859 | chr4:147055618-147138397 | Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
