Variant report

Variant	rs73855118
Chromosome Location	chr4:147175319-147175320
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:147173157..147178069-chr4:147179636..147183576,5	MCF-7	breast:
2	chr4:147170985..147173842-chr4:147174178..147175916,2	K562	blood:
3	chr4:147165553..147167400-chr4:147173717..147175594,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1550081	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17021280	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55782738	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55853628	1.00[EUR][1000 genomes]
rs55930229	1.00[EUR][1000 genomes]
rs56099921	1.00[EUR][1000 genomes]
rs57083284	1.00[EUR][1000 genomes]
rs58863965	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59148890	1.00[EUR][1000 genomes]
rs59361076	1.00[EUR][1000 genomes]
rs59424517	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61466735	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72950636	1.00[EUR][1000 genomes]
rs73852859	1.00[EUR][1000 genomes]
rs73855113	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73855116	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73855119	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73855120	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73855121	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73855124	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73855125	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73855129	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73855141	1.00[EUR][1000 genomes]
rs73855509	1.00[EUR][1000 genomes]
rs73855522	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73855523	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461675	chr4:147116864-147768206	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv595651	chr4:147116864-147768206	Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv822765	chr4:147175178-147175713	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147163200-147178000	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr4:147163800-147176000	Weak transcription	HSMM	muscle
3	chr4:147164800-147177200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr4:147164800-147207200	Weak transcription	Thymus	Thymus
5	chr4:147165000-147207200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr4:147165200-147176200	Weak transcription	Primary B cells from cord blood	blood
7	chr4:147165200-147207200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr4:147165400-147176600	Weak transcription	GM12878-XiMat	blood
9	chr4:147165400-147181600	Weak transcription	Small Intestine	intestine
10	chr4:147165600-147177000	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr4:147166000-147181600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr4:147166000-147207800	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr4:147166600-147177200	Weak transcription	Primary T cells from cord blood	blood
14	chr4:147166800-147178000	Weak transcription	Left Ventricle	heart
15	chr4:147166800-147181800	Weak transcription	Esophagus	oesophagus
16	chr4:147166800-147181800	Weak transcription	Gastric	stomach
17	chr4:147166800-147186400	Weak transcription	Spleen	Spleen
18	chr4:147166800-147187200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr4:147166800-147190000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr4:147166800-147207200	Weak transcription	Right Ventricle	heart
21	chr4:147167000-147207200	Weak transcription	Aorta	Aorta
22	chr4:147167000-147217600	Weak transcription	Rectal Smooth Muscle	rectum
23	chr4:147167200-147178600	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr4:147167400-147176200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr4:147167400-147178400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr4:147167400-147185800	Weak transcription	Stomach Smooth Muscle	stomach
27	chr4:147167400-147209000	Weak transcription	Ovary	ovary
28	chr4:147167600-147177400	Weak transcription	Fetal Lung	lung
29	chr4:147167800-147178600	Weak transcription	Adipose Nuclei	Adipose
30	chr4:147167800-147188600	Weak transcription	Pancreas	Pancrea
31	chr4:147168800-147177000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr4:147169200-147177200	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr4:147169800-147176600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr4:147170000-147178800	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr4:147170000-147196400	Weak transcription	Fetal Intestine Small	intestine
36	chr4:147171000-147176000	Weak transcription	Liver	Liver
37	chr4:147171800-147176400	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr4:147172600-147184600	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr4:147173600-147176800	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr4:147173800-147176000	Enhancers	A549	lung
41	chr4:147174200-147206800	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr4:147174400-147181600	Weak transcription	Placenta	Placenta
43	chr4:147174400-147231200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr4:147174800-147176600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr4:147174800-147180400	Weak transcription	Fetal Kidney	kidney
46	chr4:147174800-147180400	Weak transcription	HepG2	liver
47	chr4:147174800-147207800	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr4:147174800-147218400	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr4:147175000-147177200	Weak transcription	Stomach Mucosa	stomach
50	chr4:147175000-147180400	Weak transcription	Fetal Intestine Large	intestine

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