Variant report

Variant	rs55940524
Chromosome Location	chr1:185412348-185412349
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10911691	1.00[AMR][1000 genomes]
rs12088208	1.00[AMR][1000 genomes]
rs55785813	1.00[AMR][1000 genomes]
rs55868516	1.00[AMR][1000 genomes]
rs57402553	1.00[AMR][1000 genomes]
rs58169917	1.00[AMR][1000 genomes]
rs58478654	1.00[AMR][1000 genomes]
rs58677790	1.00[AMR][1000 genomes]
rs59295359	1.00[AMR][1000 genomes]
rs60005347	1.00[AMR][1000 genomes]
rs74132215	1.00[AMR][1000 genomes]
rs74132217	1.00[AMR][1000 genomes]
rs74132289	1.00[AMR][1000 genomes]
rs74132300	1.00[AMR][1000 genomes]
rs74132493	1.00[AMR][1000 genomes]
rs74132494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74132495	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74132499	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74132952	1.00[AMR][1000 genomes]
rs74132956	1.00[AMR][1000 genomes]
rs74132958	1.00[AMR][1000 genomes]
rs74132959	1.00[AMR][1000 genomes]
rs74132961	1.00[AMR][1000 genomes]
rs74133203	1.00[AMR][1000 genomes]
rs74133206	1.00[AMR][1000 genomes]
rs74133208	1.00[AMR][1000 genomes]
rs74133210	1.00[AMR][1000 genomes]
rs74133214	1.00[AMR][1000 genomes]
rs74135005	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74135006	1.00[AMR][1000 genomes]
rs74135007	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv1001493	chr1:185408956-185436842	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185410200-185412400	Enhancers	Fetal Kidney	kidney
2	chr1:185411600-185420200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:185411800-185416400	Weak transcription	A549	lung
4	chr1:185412000-185413200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:185412200-185412400	Enhancers	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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