Variant report

Variant	rs55785813
Chromosome Location	chr1:185550913-185550914
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs55646109	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55868516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55940524	1.00[AMR][1000 genomes]
rs55953486	1.00[AFR][1000 genomes]
rs57402553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58169917	1.00[AMR][1000 genomes]
rs58478654	1.00[AMR][1000 genomes]
rs58677790	1.00[AMR][1000 genomes]
rs60005347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60245030	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74132493	1.00[AMR][1000 genomes]
rs74132494	1.00[AMR][1000 genomes]
rs74132495	1.00[AMR][1000 genomes]
rs74132499	1.00[AMR][1000 genomes]
rs74132952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74132956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74132958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74132959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74132961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133210	1.00[AMR][1000 genomes]
rs74133214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133237	1.00[AMR][1000 genomes]
rs74135005	1.00[AMR][1000 genomes]
rs74135006	1.00[AMR][1000 genomes]
rs74135007	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185540600-185551200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:185547400-185557200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:185549800-185551200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
4	chr1:185550400-185554000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:185550800-185551600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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